Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs34207069 | chr16:12003079 | TA/T | 7.16E-13 | 485 | 15.7 | 18.3 | 9 | KM Plot |
| THCA | rs34209074 | chr14:36224052 | T/C | 5.08E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs34218690 | chr2:55255923 | CA/C | 0.000171 | 480 | 12.5 | 16.08 | 17.73 | KM Plot |
| THCA | rs34227290 | chr6:99317328 | GA/G | 1.99E-5 | 488 | 15.67 | 18.45 | 25.13 | KM Plot |
| THCA | rs34231347 | chr14:36021362 | G/T | 5.87E-6 | 483 | 16.08 | 16.07 | 8.33 | KM Plot |
| THCA | rs34231582 | chr4:16100916 | T/A | 7.65E-9 | 480 | 16.9 | 14.03 | 8.37 | KM Plot |
| THCA | rs34237014 | chr10:7850291 | ACT/A | 6.59E-6 | 486 | 15.17 | 16.05 | 15.7 | KM Plot |
| THCA | rs34260960 | chr16:20600519 | T/A | 4.77E-6 | 477 | 15.93 | 16.4 | 14.27 | KM Plot |
| THCA | rs34264302 | chr11:4125176 | CAA/C | 0.000105 | 465 | 19.87 | 15.17 | 15.97 | KM Plot |
| THCA | rs34269788 | chr3:53936811 | C/T | 4.22E-15 | 489 | 15.9 | 16.87 | 10.35 | KM Plot |
| THCA | rs34288559 | chr1:37897963 | G/A | 6.52E-6 | 473 | 15.97 | 14.73 | 7 | KM Plot |
| THCA | rs34290283 | chr10:104682085 | A/ATT | 3.8E-8 | 488 | 15.48 | 16.9 | 19.1 | KM Plot |
| THCA | rs34293349 | chr14:36040892 | A/T | 5.27E-6 | 486 | 16.22 | 16.22 | 8.33 | KM Plot |
| THCA | rs34294658 | chr3:72997363 | C/G | 4.96E-5 | 475 | 16.63 | 14.9 | 14.3 | KM Plot |
| THCA | rs34310098 | chr17:57481947 | TGA/T | 2.51E-6 | 474 | 16.22 | 14.78 | 17.62 | KM Plot |